Diversity in academia

I have ADHD and dyslexia. It has taken me years to be comfortable openly talking about this. I think the most surprising thing to me was that the greatest obstacle was myself. Not only the ‘diversity community’ but the academic community as a whole have been very welcoming. Below are my thoughts and experiences but I realize that many have not been so fortunate as myself.

I think its important to talk openly about this. First, it helps us accept ourselves - both our strengths and weakness. Secondly, there are a lot of opportunities for those brave enough to identify themselves, especially those with non-apparent disabilities.

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PCR - Photocopying Genes

PCR is a common technique used to amplify specific regions of DNA. Put more simply, its a process that allows us to create copies of a piece of DNA. There are two main properties of PCR that we take advantage of - amplification (getting many copies) and isolation (of a single region).

If you understand the basic idea of photocopying, then you can understand PCR.

A short stretch of DNA that goes through 2 cycles of amplification ending up with 4 copies. I should note that the role of PCR has changed over time and I will mostly be focusing on the current use. Additionally, there are several variants based off the standard PCR, including rt/qPCR, but those will be covered in a different post.

Why do a PCR?

Typically PCR is just a step to let us do something else with a gene or region of DNA. It is the first step in gene cloning or for things like gene editing. It can also be used ‘genotype’ an individual for a gene, i.e. figure out which specific copy of a gene someone has.

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Gene Cloning: vectors, plasmids, ligations, and transformation - oh my!

The goal of gene cloning is to get a single copy of the gene from an animal and into an archive. The rest is just the individual steps necessary to do this. Cloning genes allows us to easily and consistently retrieve the exact same copy and to share it between labs or even organisms.

Step Description Biology Jargon
1     Get a copy of the gene from the animal PCR
2     Put the gene in an archival format Ligation into a plasmid
3     Make backup copies or archive it Bacterial transformation
4     Confirm that the copies match the original    Sequence the insert
5     Retrieve a copy to use Miniprep

What is a vector and what how is it used?

A vector is a small, self contained piece of DNA that can be added to an organism, typically bacteria. It is how we archive the gene we are cloning.

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Genes, Phenotypes and Traits

We are constantly seeing both news articles as well as scientific publications on new genes - the new gene for intelligence, cancer or happiness. So lets start at the beginning by figuring out what a gene is. Simply, its a way to refer to inherited traits.

When a gene is identified as playing a role in a trait, this can be caused by basically two things - 1) different versions of a gene called an allele or 2) changes in how or where a gene is used. To understand how genes can give rise to different traits, we need to first understand how a gene functions.

Thus, lets look at how, in the simplest case, a trait like the color of a flower, can arise from a gene.

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